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<article article-type="research-article" dtd-version="1.3" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xml:lang="ru"><front><journal-meta><journal-id journal-id-type="publisher-id">oncotomsk</journal-id><journal-title-group><journal-title xml:lang="ru">Сибирский онкологический журнал</journal-title><trans-title-group xml:lang="en"><trans-title>Siberian journal of oncology</trans-title></trans-title-group></journal-title-group><issn pub-type="ppub">1814-4861</issn><issn pub-type="epub">2312-3168</issn><publisher><publisher-name>Tomsk National Research Medical Сепtеr of the Russian Academy of Sciences</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.21294/1814-4861-2021-20-6-164-170</article-id><article-id custom-type="elpub" pub-id-type="custom">oncotomsk-2000</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="ru"><subject>СЛУЧАЙ ИЗ КЛИНИЧЕСКОЙ ПРАКТИКИ</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="en"><subject>CASE REPORTS</subject></subj-group></article-categories><title-group><article-title>Новая мутация в гене TP53, ассоциированная с наследственным раком молочной железы, у молодой пациентки тувинской национальности</article-title><trans-title-group xml:lang="en"><trans-title>New mutation of the TP53 gene associated with the hereditary breast cancer in a young Tuvinian woman</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-0051-8814</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Гервас</surname><given-names>П. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Gervas</surname><given-names>P. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p> кандидат медицинских наук, научный сотрудник лаборатории молекулярной онкологии и иммунологии, руководитель группы молекулярно-генетических методов исследований в референсном центре</p><p>SPIN-code: 2934-7970. Researcher ID (WOS): C-5846-2012. Author ID (Scopus): 13613767400</p><p>Россия, 634009, г. Томск, пер. Кооперативный, 5</p></bio><bio xml:lang="en"><p> PhD, Researcher, Laboratory of Molecular Oncology and Immunology, Head of the Group of Molecular-Genetic Research Methods, Reference Center</p><p>SPIN-code: 2934-7970. Researcher ID (WOS): C-5846-2012. Author ID (Scopus): 13613767400 </p><p>5, Kooperativny street, 634009, Tomsk, Russia </p></bio><email xlink:type="simple">pgervas@yandex.ru</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-1475-1185</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Молоков</surname><given-names>А. Ю.</given-names></name><name name-style="western" xml:lang="en"><surname>Molokov</surname><given-names>A. Yu.</given-names></name></name-alternatives><bio xml:lang="ru"><p> аспирант ТГУ, младший научный сотрудник лаборатории молекулярной онкологии и иммунологии</p><p>SPIN-code: 1347-8410. Researcher ID (WOS): AAF-7302-2021. Author ID (Scopus): 57217493727</p><p>Россия, 634009, г. Томск, пер. Кооперативный, 5</p></bio><bio xml:lang="en"><p> Postgraduate, Tomsk State University; Junior Researcher, Laboratory of Molecular Oncology and Immunology</p><p>SPIN-code: 1347-8410. Researcher ID (WOS): AAF-7302-2021. Author ID (Scopus): 57217493727 </p><p>5, Kooperativny street, 634009, Tomsk, Russia </p></bio><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-6568-6339</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Зарубин</surname><given-names>А. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Zarubin</surname><given-names>A. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p> аспирант, младший научный сотрудник лаборатории геномики орфанных болезней</p><p>SPIN-code: 7568-0098. Researcher ID (WOS): H-7476-2017. Author ID (Scopus): 57204453703</p><p>Россия, 634050, г. Томск, ул. Набережная Ушайки, 10</p></bio><bio xml:lang="en"><p> Laboratory Researcher, Evolutionary Genetics Laboratory; Postgraduate, Population Genetics Laboratory</p><p>SPIN-code: 7568-0098. Researcher ID (WOS): H-7476-2017. Author ID (Scopus): 57204453703 </p><p> 10, Nab. Ushaiki, 634050, Tomsk, Russia </p></bio><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-2060-4840</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Пономарева</surname><given-names>А. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Ponomareva</surname><given-names>A. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p> кандидат биологических наук, научный сотрудник лаборатории молекулярной онкологии и иммунологии</p><p>SPIN-code: 3185-5606. Researcher ID (WOS): D-8734-2012. Author ID (Scopus): 37116096000</p><p>Россия, 634009, г. Томск, пер. Кооперативный, 5</p></bio><bio xml:lang="en"><p> PhD, Researcher, Laboratory of Molecular Oncology and Immunology; Head of the Group of MolecularGenetic Research Methods, Reference Center</p><p>SPIN-code: 3185-5606. Researcher ID (WOS): D-8734-2012. Author ID (Scopus): 37116096000 </p><p>5, Kooperativny street, 634009, Tomsk, Russia </p></bio><xref ref-type="aff" rid="aff-3"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-0562-3878</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Бабышкина</surname><given-names>Н. Н.</given-names></name><name name-style="western" xml:lang="en"><surname>Babyshkina</surname><given-names>N. N.</given-names></name></name-alternatives><bio xml:lang="ru"><p> доктор медицинских наук, старший научный сотрудник лаборатории молекулярной онкологии и иммунологии</p><p>SPIN-code: 2738-9275. Researcher ID (WOS): A-7526-2012. AuthorID (Scopus): 26641099700</p><p>Россия, 634009, г. Томск, пер. Кооперативный, 5</p></bio><bio xml:lang="en"><p> MD, DSc, Senior Researcher, Department of Experimental Oncology, Laboratory of Molecular Oncology and Immunology</p><p>SPIN-code: 2738-9275. Researcher ID (WOS): A-7526-2012. Author ID (Scopus): 26641099700 </p><p>5, Kooperativny street, 634009, Tomsk, Russia </p></bio><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Белявская</surname><given-names>В. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Belyavskaya</surname><given-names>V. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p> доктор биологических наук, профессор, ведущий научный сотрудник </p><p>Россия, 630559, пос. Кольцово</p></bio><bio xml:lang="en"><p> Professor, Leading Researcher </p><p> 630559, Koltsovo, Novosibirsk region, Russia </p><p> </p></bio><xref ref-type="aff" rid="aff-4"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-3507-0095</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Писарева</surname><given-names>Л. Ф.</given-names></name><name name-style="western" xml:lang="en"><surname>Pisareva</surname><given-names>L. F.</given-names></name></name-alternatives><bio xml:lang="ru"><p> профессор</p><p>SPIN-code: 3529-0202. Researcher ID (WOS): D-2353-2012. Author ID (Scopus): 7003646806  </p><p>Россия, 634009, г. Томск, пер. Кооперативный, 5</p></bio><bio xml:lang="en"><p> Professor</p><p>SPIN-code: 3529-0202. Researcher ID (WOS): D-2353-2012. Author ID (Scopus): 7003646806 </p><p>5, Kooperativny street, 634009, Tomsk, Russia </p></bio><xref ref-type="aff" rid="aff-5"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-3651-0665</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Чойнзонов</surname><given-names>Е. Л.</given-names></name><name name-style="western" xml:lang="en"><surname>Choynzonov</surname><given-names>E. L.</given-names></name></name-alternatives><bio xml:lang="ru"><p> доктор медицинских наук, профессор, академик РАН, директор; заведующий кафедрой онкологии, Сибирский государственный медицинский университет</p><p>SPIN-code: 2240-8730. Researcher ID (WOS): P-1470-2014. Author ID (Scopus): 6603352329</p><p>Россия, 634009, г. Томск, пер. Кооперативный, 5</p></bio><bio xml:lang="en"><p> MD, DSc, Professor, Academician of the Russian Academy of Sciences, Director; Head of Oncology Department, Siberian State Medical University</p><p>SPIN-code: 2240-8730. Researcher ID (WOS): P-1470-2014. Author ID (Scopus): 6603352329 </p><p>5, Kooperativny street, 634009, Tomsk, Russia </p></bio><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-1526-9013</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Чердынцева</surname><given-names>Н. В.</given-names></name><name name-style="western" xml:lang="en"><surname>Cherdyntseva</surname><given-names>N. V.</given-names></name></name-alternatives><bio xml:lang="ru"><p> доктор биологических наук, профессор, член-корреспондент РАН, заведующая лабораторией молекулярной онкологии и иммунологии, заместитель директора; ведущий научный сотрудник лаборатории  трансляционной клеточной и молекулярной биомедицины, Томский государственный университет; научный сотрудниклаборатории генетических технологий, Сибирский государственный медицинский университет </p><p>SPIN-code: 5344-0990. Researcher ID (WOS): C-7943-2012. Author ID (Scopus): 6603911744 </p><p>Россия, 634009, г. Томск, пер. Кооперативный, 5</p></bio><bio xml:lang="en"><p> DSc, Professor, Corresponding Member of the Russian Academy of Sciences, Deputy Director; Head of the Department of Molecular Oncology and Immunology of Cancer Research Institute, Leading Researcher of the Laboratory for Translational Cell and Molecular Biomedicine of Tomsk State University </p><p>SPIN-code: 5344-0990. Researcher ID (WOS): C-7943-2012. Author ID (Scopus): 6603911744 </p><p> 5, Kooperativny street, 634009, Tomsk, Russia </p></bio><xref ref-type="aff" rid="aff-1"/></contrib></contrib-group><aff-alternatives id="aff-1"><aff xml:lang="ru"><institution>Научно-исследовательский институт онкологии, Томский национальный исследовательский медицинский центр Российской академии наук</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Cancer Research Institute, Tomsk National Research Medical Center, Russian Academy of Sciences</institution><country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-2"><aff xml:lang="ru"><institution>Научно-исследовательский институт медицинской генетики, Томский национальный исследовательский медицинский центр, Российская академия наук</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Research Institute of Medical Genetics, Tomsk National Research Medical Center, Russian Academy of Sciences</institution><country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-3"><aff xml:lang="ru"><institution>Научно-исследовательский институт онкологии, Томский национальный исследовательский медицинский центр Российской академии наук</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Cancer Research Institute, Tomsk National Research Medical Center, Russian Academy  of Sciences</institution><country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-4"><aff xml:lang="ru"><institution>ФБУН «Государственный научный центр вирусологии и биотехнологии «Вектор»</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Research Center of Virology and Biotechnology Vector</institution><country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-5"><aff xml:lang="ru"><institution>Научно-исследовательский институт онкологии, Томский национальный исследовательский медицинский центр Российской академии наук</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Cancer Research Institute, Tomsk NRMC</institution><country>Russian Federation</country></aff></aff-alternatives><pub-date pub-type="collection"><year>2021</year></pub-date><pub-date pub-type="epub"><day>14</day><month>01</month><year>2022</year></pub-date><volume>20</volume><issue>6</issue><fpage>164</fpage><lpage>170</lpage><permissions><copyright-statement>Copyright &amp;#x00A9; Гервас П.А., Молоков А.Ю., Зарубин А.А., Пономарева А.А., Бабышкина Н.Н., Белявская В.А., Писарева Л.Ф., Чойнзонов Е.Л., Чердынцева Н.В., 2022</copyright-statement><copyright-year>2022</copyright-year><copyright-holder xml:lang="ru">Гервас П.А., Молоков А.Ю., Зарубин А.А., Пономарева А.А., Бабышкина Н.Н., Белявская В.А., Писарева Л.Ф., Чойнзонов Е.Л., Чердынцева Н.В.</copyright-holder><copyright-holder xml:lang="en">Gervas P.A., Molokov A.Y., Zarubin A.A., Ponomareva A.A., Babyshkina N.N., Belyavskaya V.A., Pisareva L.F., Choynzonov E.L., Cherdyntseva N.V.</copyright-holder><license xml:lang="ru" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>Данная работа распространяется под лицензией Creative Commons Attribution 4.0.</license-p></license><license xml:lang="en" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>This work is licensed under a Creative Commons Attribution 4.0 License.</license-p></license></permissions><self-uri xlink:href="https://www.siboncoj.ru/jour/article/view/2000">https://www.siboncoj.ru/jour/article/view/2000</self-uri><abstract><p>Введение. Проблема идентификации в российских популяциях этноспецифических мутаций, ассоциированных с наследственными формами рака молочной железы, остается открытой. Технология высокопроизводительного секвенирования является методом выбора, однако существуют сложности интерпретации полученного массива данных при аннотировании их с использованием общепринятых баз данных. Так, для малоизученных популяций от 20 % молекулярных тестов сообщают о генетических вариантах неизвестного значения (Vus) или новых вариантах, которые ранее не были описаны. Для получения расширенной информации о вариантах высокопроизводительного секвенирования неизвестного значения необходимо использовать альтернативные подходы анализа данных. Материал и методы. Проведена реклассификация мутации неизвестного значения гена ТР53 с использованием базы данных activedrivedB, которая оценивает влияние мутаций на сайты посттрансляционных модификаций, и инструмента proteinpaint, который обеспечивает всестороннее и интуитивно понятное представление о геномных данных. Результаты. Мутация гена tp53 (rs1555526933) была обнаружена у молодой тувинки 44 лет с диагнозом РМЖ. В базе данных dbpubmed (rs1555526933, chr17:7579716, g&gt;a, pro27leu) эта мутация является вариантом неизвестного значения (unknown significance) с отсутствием информации о частоте встречаемости минорного аллеля. Согласно данным инструмента activedriverdB, эта мутация расположена дистально в сайте посттрансляционной модификации белков, отвечающем за связывание с киназами, регулирующими гены клеточного цикла и др. (atm, cHeK2, cdK, mapK). Согласно данным proteinpoint, эта мутация находится в кодоне, где ранее была описана патогенная мутация гена tp53 p.leu26glnfster4 (Nm_000546.6 (tp53): c.77_80delinsaagaacgt (p.leu26fs), приводящая к формированию синдрома Ли – Фраумени (группа редких наследственных опухолевых заболеваний). Заключение. Впервые у пациентки (тувинский этнос) с ранним началом РМЖ и отягощенным онкологическим анамнезом описан вариант гена tp53 (rs1555526933), который может быть связан с синдромом наследственной предрасположенности к РМЖ, включая синдром Ли – Фраумени.</p></abstract><trans-abstract xml:lang="en"><p>Background. The identification of the ethnospecific mutations associated with hereditary breast cancer remains challenging. Next generation sequencing (Ngs) technology fully enables the compilation of germline variants associated with the risk for inherited diseases. Despite the success of the Ngs, up to 20 % of molecular tests report genetic variant of unknown significance (Vus) or novel variants that have never been previously described and their clinical significances are unknown. To obtain extended information about the variants of the unknown significance, it is necessary to use an alternative approach for the analysis of the Ngs data. To obtain extended characteristic about the unknown significance variants, it is necessary to search for additional tools for the analysis of the Ngs data. Material and methods. We reclassified the mutation of the unknown significance using the activedrivedb database that assessed the effect of mutations on sites of post-translational modifications, and the proteinpaint tool that complemented the existing cancer genome portals and provided a comprehensive and intuitive view of cancer genomic data. Results. In this study, we report a 44-year-old tuvinian woman with a family history of breast cancer. Based on the Ngs data, mutational analysis revealed the presence of the lrg_321t1: c.80c&gt;t heterozygous variant in exon 2, which led to the proline to leucine change at codon 27 of the protein. In the dbpubmed database, this mutation was determined as unknown significance due to data limitation. According to the data of the activedriverdb tool, this mutation is located distally at the site of post-translational protein modification, which is responsible for binding to kinases that regulate genes of the cell cycle, etc. (atm, chek2, cdk, mapk). In accordance with proteinpaint tool, the lrg_321t1: c.80c&gt;t mutation is located in functionally specialized transactivation domains and codon of the tp53 gene, where the pathogenic mutation associated with li-Fraumeni syndrome has been earlier described. Conclusion. This report is the first to describe a new variant in the tp53 gene (rs1555526933), which is likely to be associated with hereditary cancer-predisposing syndrome, including li-Fraumeni syndrome, in a tuvinian Bc patient with young-onset and familial Bc.</p></trans-abstract><kwd-group xml:lang="ru"><kwd>наследственные мутации</kwd><kwd>рак молочной железы</kwd><kwd>малые народы России</kwd><kwd>этносы</kwd><kwd>тувинцы</kwd></kwd-group><kwd-group xml:lang="en"><kwd>germline mutation</kwd><kwd>breast cancer</kwd><kwd>small nationality of Russia</kwd><kwd>ethnic group</kwd><kwd>tuvinian</kwd></kwd-group><funding-group><funding-statement xml:lang="ru">Исследование выполнено при финансовой поддержке РФФИ в рамках научного проекта № 18-29- 09046</funding-statement><funding-statement xml:lang="en">The reported study was funded by RFBR according to research project № 18-29-09046.</funding-statement></funding-group></article-meta></front><back><ref-list><title>References</title><ref id="cit1"><label>1</label><citation-alternatives><mixed-citation xml:lang="ru">Sokolenko A.P., Preobrazhenskaya E.V., Aleksakhina S.N., Iyevleva A.G., Mitiushkina N.V., Zaitseva O.A., Yatsuk O.S., Tiurin V.I., Strelkova T.N., Togo A.V., Imyanitov E.N. Candidate gene analysis of BRCA1/2 mutationnegative high-risk Russian breast cancer patients. Cancer Lett. 2015; 359(2): 259–61. doi: 10.1016/j.canlet.2015.01.022.</mixed-citation><mixed-citation xml:lang="en">Sokolenko A.P., Preobrazhenskaya E.V., Aleksakhina S.N., Iyevleva A.G., Mitiushkina N.V., Zaitseva O.A., Yatsuk O.S., Tiurin V.I., Strelkova T.N., Togo A.V., Imyanitov E.N. Candidate gene analysis of BRCA1/2 mutationnegative high-risk Russian breast cancer patients. Cancer Lett. 2015; 359(2): 259–61. doi: 10.1016/j.canlet.2015.01.022.</mixed-citation></citation-alternatives></ref><ref id="cit2"><label>2</label><citation-alternatives><mixed-citation xml:lang="ru">Plon S.E., Eccles D.M., Easton D., Foulkes W.D., Genuardi M., Greenblatt M.S., Hogervorst F.B., Hoogerbrugge N., Spurdle A.B., Tavtigian S.V.; IARC Unclassified Genetic Variants Working Group. Sequence variant classification and reporting: recommendations for improving the interpretation of cancer susceptibility genetic test results. Hum Mutat. 2008 Nov; 29(11): 1282–91. doi: 10.1002/humu.20880. PMID: 18951446; PMCID: PMC3075918.</mixed-citation><mixed-citation xml:lang="en">Plon S.E., Eccles D.M., Easton D., Foulkes W.D., Genuardi M., Greenblatt M.S., Hogervorst F.B., Hoogerbrugge N., Spurdle A.B., Tavtigian S.V.; IARC Unclassified Genetic Variants Working Group. Sequence variant classification and reporting: recommendations for improving the interpretation of cancer susceptibility genetic test results. Hum Mutat. 2008 Nov; 29(11): 1282–91. doi: 10.1002/humu.20880. PMID: 18951446; PMCID: PMC3075918.</mixed-citation></citation-alternatives></ref><ref id="cit3"><label>3</label><citation-alternatives><mixed-citation xml:lang="ru">Richards S., Aziz N., Bale S., Bick D., Das S., Gastier-Foster J., Grody W.W., Hegde M., Lyon E., Spector E., Voelkerding K., Rehm H.L.; ACMG Laboratory Quality Assurance Committee. Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet Med. 2015 May; 17(5): 405–24. doi: 10.1038/gim.2015.30.</mixed-citation><mixed-citation xml:lang="en">Richards S., Aziz N., Bale S., Bick D., Das S., Gastier-Foster J., Grody W.W., Hegde M., Lyon E., Spector E., Voelkerding K., Rehm H.L.; ACMG Laboratory Quality Assurance Committee. Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet Med. 2015 May; 17(5): 405–24. doi: 10.1038/gim.2015.30.</mixed-citation></citation-alternatives></ref><ref id="cit4"><label>4</label><citation-alternatives><mixed-citation xml:lang="ru">Cherdyntseva N.V., Pisareva L.F., Ivanova A.A., Panferova Y.V., Malinovskaya E.A., Odintsova I.N., Doroshenko A.V., Gervas P.A., Slonimskaya E.M., Shivit-ool A.A., Dvornichenko V.V., Choinzonov Y.L. Ethnic aspects of hereditary breast cancer in the region of Siberia. Vestn Ross Akad Med Nauk. 2014; 11–12: 72–9. doi: 10.15690/vramn.v69i11-12.1186. [Article in Russian].</mixed-citation><mixed-citation xml:lang="en">Cherdyntseva N.V., Pisareva L.F., Ivanova A.A., Panferova Y.V., Malinovskaya E.A., Odintsova I.N., Doroshenko A.V., Gervas P.A., Slonimskaya E.M., Shivit-ool A.A., Dvornichenko V.V., Choinzonov Y.L. Ethnic aspects of hereditary breast cancer in the region of Siberia. Vestn Ross Akad Med Nauk. 2014; 11–12: 72–9. doi: 10.15690/vramn.v69i11-12.1186. [Article in Russian].</mixed-citation></citation-alternatives></ref><ref id="cit5"><label>5</label><citation-alternatives><mixed-citation xml:lang="ru">Eccles D.M. Hereditary cancer: guidelines in clinical practice. Breast and ovarian cancer genetics. Ann Oncol. 2004; 15 Suppl 4: iv133-8. doi: 10.1093/annonc/mdh917.</mixed-citation><mixed-citation xml:lang="en">Eccles D.M. Hereditary cancer: guidelines in clinical practice. Breast and ovarian cancer genetics. Ann Oncol. 2004; 15 Suppl 4: iv133-8. doi: 10.1093/annonc/mdh917.</mixed-citation></citation-alternatives></ref><ref id="cit6"><label>6</label><citation-alternatives><mixed-citation xml:lang="ru">Slatko B.E., Gardner A.F., Ausubel F.M. Overview of Next-Generation Sequencing Technologies. Curr Protoc Mol Biol. 2018; 122(1): e59. doi: 10.1002/cpmb.59.</mixed-citation><mixed-citation xml:lang="en">Slatko B.E., Gardner A.F., Ausubel F.M. Overview of Next-Generation Sequencing Technologies. Curr Protoc Mol Biol. 2018; 122(1): e59. doi: 10.1002/cpmb.59.</mixed-citation></citation-alternatives></ref><ref id="cit7"><label>7</label><citation-alternatives><mixed-citation xml:lang="ru">Van der Auwera G.A., Carneiro M.O., Hartl C., Poplin R., Del Angel G., Levy-Moonshine A., Jordan T., Shakir K., Roazen D., Thibault J., Banks E., Garimella K.V., Altshuler D., Gabriel S., DePristo M.A. From FastQ data to high confidence variant calls: the Genome Analysis Toolkit best practices pipeline. Curr Protoc Bioinformatics. 2013; 43(1110): 11.10.1–11.10.33. doi: 10.1002/0471250953.bi1110s43.</mixed-citation><mixed-citation xml:lang="en">Van der Auwera G.A., Carneiro M.O., Hartl C., Poplin R., Del Angel G., Levy-Moonshine A., Jordan T., Shakir K., Roazen D., Thibault J., Banks E., Garimella K.V., Altshuler D., Gabriel S., DePristo M.A. From FastQ data to high confidence variant calls: the Genome Analysis Toolkit best practices pipeline. Curr Protoc Bioinformatics. 2013; 43(1110): 11.10.1–11.10.33. doi: 10.1002/0471250953.bi1110s43.</mixed-citation></citation-alternatives></ref><ref id="cit8"><label>8</label><citation-alternatives><mixed-citation xml:lang="ru">DePristo M.A., Banks E., Poplin R., Garimella K.V., Maguire J.R., Hartl C., Philippakis A.A., del Angel G., Rivas M.A., Hanna M., McKenna A., Fennell T.J., Kernytsky A.M., Sivachenko A.Y., Cibulskis K., Gabriel S.B., Altshuler D., Daly M.J. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet. 2011 May; 43(5): 491–8. doi: 10.1038/ng.806.</mixed-citation><mixed-citation xml:lang="en">DePristo M.A., Banks E., Poplin R., Garimella K.V., Maguire J.R., Hartl C., Philippakis A.A., del Angel G., Rivas M.A., Hanna M., McKenna A., Fennell T.J., Kernytsky A.M., Sivachenko A.Y., Cibulskis K., Gabriel S.B., Altshuler D., Daly M.J. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet. 2011 May; 43(5): 491–8. doi: 10.1038/ng.806.</mixed-citation></citation-alternatives></ref><ref id="cit9"><label>9</label><citation-alternatives><mixed-citation xml:lang="ru">McKenna A., Hanna M., Banks E., Sivachenko A., Cibulskis K., Kernytsky A., Garimella K., Altshuler D., Gabriel S., Daly M., DePristo M.A. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 2010 Sep; 20(9): 1297–303. doi: 10.1101/gr.107524.110.</mixed-citation><mixed-citation xml:lang="en">McKenna A., Hanna M., Banks E., Sivachenko A., Cibulskis K., Kernytsky A., Garimella K., Altshuler D., Gabriel S., Daly M., DePristo M.A. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 2010 Sep; 20(9): 1297–303. doi: 10.1101/gr.107524.110.</mixed-citation></citation-alternatives></ref><ref id="cit10"><label>10</label><citation-alternatives><mixed-citation xml:lang="ru">Adzhubei I.A., Schmidt S., Peshkin L., Ramensky V.E., Gerasimova A., Bork P., Kondrashov A.S., Sunyaev S.R.A method and server for predicting damaging missense mutations. Nat Methods. 2010 Apr; 7(4): 248–9. doi: 10.1038/nmeth0410-248.</mixed-citation><mixed-citation xml:lang="en">Adzhubei I.A., Schmidt S., Peshkin L., Ramensky V.E., Gerasimova A., Bork P., Kondrashov A.S., Sunyaev S.R.A method and server for predicting damaging missense mutations. Nat Methods. 2010 Apr; 7(4): 248–9. doi: 10.1038/nmeth0410-248.</mixed-citation></citation-alternatives></ref><ref id="cit11"><label>11</label><citation-alternatives><mixed-citation xml:lang="ru">Schwarz J.M., Cooper D.N., Schuelke M., Seelow D. MutationTaster2: mutation prediction for the deep-sequencing age. Nat Methods. 2014 Apr; 11(4): 361–2. doi: 10.1038/nmeth.2890.</mixed-citation><mixed-citation xml:lang="en">Schwarz J.M., Cooper D.N., Schuelke M., Seelow D. MutationTaster2: mutation prediction for the deep-sequencing age. Nat Methods. 2014 Apr; 11(4): 361–2. doi: 10.1038/nmeth.2890.</mixed-citation></citation-alternatives></ref><ref id="cit12"><label>12</label><citation-alternatives><mixed-citation xml:lang="ru">Kumar P., Henikoff S., Ng P.C. Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nature protocols. 2009; 4(7): 1073–81. doi.org/10.1038/nprot.2009.86.</mixed-citation><mixed-citation xml:lang="en">Kumar P., Henikoff S., Ng P.C. Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nature protocols. 2009; 4(7): 1073–81. doi.org/10.1038/nprot.2009.86.</mixed-citation></citation-alternatives></ref><ref id="cit13"><label>13</label><citation-alternatives><mixed-citation xml:lang="ru">Kato S., Han S.Y., Liu W., Otsuka K., Shibata H., Kanamaru R., Ishioka C. Understanding the function-structure and function-mutation relationships of p53 tumor suppressor protein by high-resolution missense mutation analysis. Proc Natl Acad Sci USA. 2003; 100(14): 8424–9. doi. org/10.1073/pnas.1431692100.</mixed-citation><mixed-citation xml:lang="en">Kato S., Han S.Y., Liu W., Otsuka K., Shibata H., Kanamaru R., Ishioka C. Understanding the function-structure and function-mutation relationships of p53 tumor suppressor protein by high-resolution missense mutation analysis. Proc Natl Acad Sci USA. 2003; 100(14): 8424–9. doi. org/10.1073/pnas.1431692100.</mixed-citation></citation-alternatives></ref><ref id="cit14"><label>14</label><citation-alternatives><mixed-citation xml:lang="ru">Samaržija I. Post-Translational Modifications That Drive Prostate Cancer Progression. Biomolecules. 2021; 11(2): 247. doi.org/10.3390/biom11020247.</mixed-citation><mixed-citation xml:lang="en">Samaržija I. Post-Translational Modifications That Drive Prostate Cancer Progression. Biomolecules. 2021; 11(2): 247. doi.org/10.3390/biom11020247.</mixed-citation></citation-alternatives></ref><ref id="cit15"><label>15</label><citation-alternatives><mixed-citation xml:lang="ru">Krassowski M., Paczkowska M., Cullion K., Huang T., Dzneladze I., Ouellette B., Yamada J.T., Fradet-Turcotte A., Reimand J.ActiveDriverDB: human disease mutations and genome variation in post-translational modification sites of proteins. Nucl Acids Res. 2018; 46(D1): D901–D910. doi. org/10.1093/nar/gkx973.</mixed-citation><mixed-citation xml:lang="en">Krassowski M., Paczkowska M., Cullion K., Huang T., Dzneladze I., Ouellette B., Yamada J.T., Fradet-Turcotte A., Reimand J.ActiveDriverDB: human disease mutations and genome variation in post-translational modification sites of proteins. Nucl Acids Res. 2018; 46(D1): D901–D910. doi. org/10.1093/nar/gkx973.</mixed-citation></citation-alternatives></ref><ref id="cit16"><label>16</label><citation-alternatives><mixed-citation xml:lang="ru">Murakami I., Fujiwara Y., Yamaoka N., Hiyama K., Ishioka S., Yamakido M. Detection of p53 gene mutations in cytopathology and biopsy specimens from patients with lung cancer. Am J Resp Crit Care Med. 1996; 154(4 Pt 1): 1117–23. doi.org/10.1164/ajrccm.154.4.8887616.</mixed-citation><mixed-citation xml:lang="en">Murakami I., Fujiwara Y., Yamaoka N., Hiyama K., Ishioka S., Yamakido M. Detection of p53 gene mutations in cytopathology and biopsy specimens from patients with lung cancer. Am J Resp Crit Care Med. 1996; 154(4 Pt 1): 1117–23. doi.org/10.1164/ajrccm.154.4.8887616.</mixed-citation></citation-alternatives></ref><ref id="cit17"><label>17</label><citation-alternatives><mixed-citation xml:lang="ru">Heide I., Thiede C., Sonntag T., de Kant E., Neubauer A., Jonas S., Peter F.J., Neuhaus P., Herrmann R., Huhn D., Rochlitz C.F. The status of p53 in the metastatic progression of colorectal cancer. Eur J Cancer. 1997; 33(8): 1314–22. doi.org/10.1016/s0959-8049(97)00118-4.</mixed-citation><mixed-citation xml:lang="en">Heide I., Thiede C., Sonntag T., de Kant E., Neubauer A., Jonas S., Peter F.J., Neuhaus P., Herrmann R., Huhn D., Rochlitz C.F. The status of p53 in the metastatic progression of colorectal cancer. Eur J Cancer. 1997; 33(8): 1314–22. doi.org/10.1016/s0959-8049(97)00118-4.</mixed-citation></citation-alternatives></ref><ref id="cit18"><label>18</label><citation-alternatives><mixed-citation xml:lang="ru">Sullivan K.D., Galbraith M.D., Andrysik Z., Espinosa J.M. Mechanisms of transcriptional regulation by p53. Cell Death Diff. 2018; 25(1): 133–43. doi.org/10.1038/cdd.2017.174.</mixed-citation><mixed-citation xml:lang="en">Sullivan K.D., Galbraith M.D., Andrysik Z., Espinosa J.M. Mechanisms of transcriptional regulation by p53. Cell Death Diff. 2018; 25(1): 133–43. doi.org/10.1038/cdd.2017.174.</mixed-citation></citation-alternatives></ref><ref id="cit19"><label>19</label><citation-alternatives><mixed-citation xml:lang="ru">Yurgelun M.B., Masciari S., Joshi V.A., Mercado R.C., Lindor N.M., Gallinger S., Hopper J.L., Jenkins M.A., Buchanan D.D., Newcomb P.A., Potter J.D., Haile R.W., Kucherlapati R., Syngal S.; Colon Cancer Family Registry. Germline TP53 Mutations in Patients With Early-Onset Colorectal Cancer in the Colon Cancer Family Registry. JAMA Oncol. 2015 May; 1(2): 214–21. doi: 10.1001/jamaoncol.2015.0197.</mixed-citation><mixed-citation xml:lang="en">Yurgelun M.B., Masciari S., Joshi V.A., Mercado R.C., Lindor N.M., Gallinger S., Hopper J.L., Jenkins M.A., Buchanan D.D., Newcomb P.A., Potter J.D., Haile R.W., Kucherlapati R., Syngal S.; Colon Cancer Family Registry. Germline TP53 Mutations in Patients With Early-Onset Colorectal Cancer in the Colon Cancer Family Registry. JAMA Oncol. 2015 May; 1(2): 214–21. doi: 10.1001/jamaoncol.2015.0197.</mixed-citation></citation-alternatives></ref><ref id="cit20"><label>20</label><citation-alternatives><mixed-citation xml:lang="ru">Palmero E.I., Schüler-Faccini L., Caleffi M., Achatz M.I., Olivier M., Martel-Planche G., Marcel V., Aguiar E., Giacomazzi J., Ewald I.P., Giugliani R., Hainaut P., Ashton-Prolla P. Detection of R337H, a germline TP53 mutation predisposing to multiple cancers, in asymptomatic women participating in a breast cancer screening program in Southern Brazil. Cancer Lett. 2008 Mar 8; 261(1): 21–5. doi: 10.1016/j.canlet.2007.10.044.</mixed-citation><mixed-citation xml:lang="en">Palmero E.I., Schüler-Faccini L., Caleffi M., Achatz M.I., Olivier M., Martel-Planche G., Marcel V., Aguiar E., Giacomazzi J., Ewald I.P., Giugliani R., Hainaut P., Ashton-Prolla P. Detection of R337H, a germline TP53 mutation predisposing to multiple cancers, in asymptomatic women participating in a breast cancer screening program in Southern Brazil. Cancer Lett. 2008 Mar 8; 261(1): 21–5. doi: 10.1016/j.canlet.2007.10.044.</mixed-citation></citation-alternatives></ref></ref-list><fn-group><fn fn-type="conflict"><p>The authors declare that there are no conflicts of interest present.</p></fn></fn-group></back></article>
