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<article article-type="research-article" dtd-version="1.3" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xml:lang="ru"><front><journal-meta><journal-id journal-id-type="publisher-id">oncotomsk</journal-id><journal-title-group><journal-title xml:lang="ru">Сибирский онкологический журнал</journal-title><trans-title-group xml:lang="en"><trans-title>Siberian journal of oncology</trans-title></trans-title-group></journal-title-group><issn pub-type="ppub">1814-4861</issn><issn pub-type="epub">2312-3168</issn><publisher><publisher-name>Tomsk National Research Medical Сепtеr of the Russian Academy of Sciences</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.21294/1814-4861-2018-17-4-53-58</article-id><article-id custom-type="elpub" pub-id-type="custom">oncotomsk-816</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="ru"><subject>КЛИНИЧЕСКИЕ ИССЛЕДОВАНИЯ</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="en"><subject>CLINICAL STUDIES</subject></subj-group></article-categories><title-group><article-title>СПЕКТР МУТАЦИЙ ГЕНА BRCA1 У БОЛЬНЫХ РАКОМ МОЛОЧНОЙ ЖЕЛЕЗЫ В МОЛОДОМ ВОЗРАСТЕ В РОССИИ</article-title><trans-title-group xml:lang="en"><trans-title>The spectrum of BRCA1 gene mutations in early onset breast cancer patients from Russia</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Анисименко</surname><given-names>М. С.</given-names></name><name name-style="western" xml:lang="en"><surname>Anisimenko</surname><given-names>M. S.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Россия, 630117, г. Новосибирск, ул. Тимакова, 2</p><p>Россия, 630117, г. Новосибирск, ул. Тимакова, 2</p><p>младший научный сотрудник, Федеральный исследовательский центр фундаментальной итрансляционной медицины </p><p>SPIN-код: 7751-0277. Researcher ID (WOS): I-3226-2017. Author ID (Scopus): 36514172600</p></bio><bio xml:lang="en"><p>2, Timakovа Street, 630117-Novosibirsk, Russia</p><p>2, Timakovа Street, 630117-Novosibirsk</p><p>junior research fellow, Federal Research Center of Fundamental and Translational Medicine</p><p>Researcher ID (WOS): I-3226-2017. Author ID (Scopus): 36514172600</p></bio><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Пауль</surname><given-names>Г. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Paul</surname><given-names>G. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Россия, 630117, г. Новосибирск, ул. Тимакова, 2</p><p>кандидат медицинских наук, заведующий лабораторией, врач-лабораторный генетик,ООО «Биолинк»</p><p>Author ID (Scopus): 56417221700</p></bio><bio xml:lang="en"><p>2, Timakovа Street, 630117-Novosibirsk, Russia</p><p>head of laboratory, laboratory physician, BioLink Ltd</p><p>Author ID (Scopus): 56417221700</p></bio><email xlink:type="simple">galapaul@mail.ru</email><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Козяков</surname><given-names>А. Е.</given-names></name><name name-style="western" xml:lang="en"><surname>Kozyakov</surname><given-names>A. E.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Россия, 630108, г. Новосибирск, ул. Плахотного, 2</p><p>заведующий отделением, врач-онколог, Новосибирский областной клинический онкологический диспансер </p><p>SPIN-код: 9596-0420. Author ID (Scopus): 56418702200</p></bio><bio xml:lang="en"><p>2, Plahotnogo Street, 630108-Novosibirsk, Russia</p><p>head of division, oncologist, Novosibirsk Regional Oncological Clinic</p><p>Author ID (Scopus): 56418702200</p></bio><email xlink:type="simple">dr-anton72@mail.ru</email><xref ref-type="aff" rid="aff-3"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Гуткина</surname><given-names>Н. И.</given-names></name><name name-style="western" xml:lang="en"><surname>Gutkina</surname><given-names>N. I.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Россия, 630117, г. Новосибирск, ул. Тимакова, 2</p><p>кандидат биологических наук, старший научный сотрудник, Федеральный исследовательскийцентр фундаментальной и трансляционной медицины</p><p>SPIN-код: 6170-9570. Author ID (Scopus): 6701374482</p></bio><bio xml:lang="en"><p>2, Timakovа Street, 630117-Novosibirsk, Russia</p><p>PhD, senior researcher, Federal Research Center of Fundamental and Translational Medicine  </p><p>Author ID (Scopus): 6701374482</p></bio><email xlink:type="simple">gutkina.nadezhda@gmail.com</email><xref ref-type="aff" rid="aff-4"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Бердюгина</surname><given-names>Д. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Berdyugina</surname><given-names>D. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Россия, 630117, г. Новосибирск, ул. Тимакова, 2</p><p>Россия, 630117, г. Новосибирск, ул. Тимакова, 2</p><p>младший научный сотрудник, Федеральный исследовательский центр фундаментальной итрансляционной медицины</p><p>SPIN-код: 4870-4030</p></bio><bio xml:lang="en"><p>2, Timakovа Street, 630117-Novosibirsk, Russia</p><p>2, Timakovа Street, 630117-Novosibirsk</p><p>junior research fellow, Federal Research Center of Fundamental and Translational Medicine</p></bio><email xlink:type="simple">kostyakovada1993@yandex.ru</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Гаранин</surname><given-names>А. Ю.</given-names></name><name name-style="western" xml:lang="en"><surname>Garanin</surname><given-names>A. Yu.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Россия, 630117, г. Новосибирск, ул. Тимакова, 2</p><p>лаборант, Федеральный исследовательский центр фундаментальной и трансляционной медицины </p></bio><bio xml:lang="en"><p>2, Timakovа Street, 630117-Novosibirsk, Russia</p><p>2, Timakovа Street, 630117-Novosibirsk</p><p>laboratory assistant, Federal Research Center of Fundamental and Translational Medicine</p></bio><email xlink:type="simple">chemistry1992sasha@mail.ru</email><xref ref-type="aff" rid="aff-5"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Буторина</surname><given-names>А. В.</given-names></name><name name-style="western" xml:lang="en"><surname>Butorina</surname><given-names>A. V.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Россия, 630117, г. Новосибирск, ул. Тимакова, 2</p><p>Россия, 630117, г. Новосибирск, ул. Тимакова, 2</p><p>лаборант, Федеральный исследовательский центр фундаментальной и трансляционной медицины </p></bio><bio xml:lang="en"><p>2, Timakovа Street, 630117-Novosibirsk, Russia</p><p>2, Timakovа Street, 630117-Novosibirsk</p><p>laboratory assistant, Federal Research Center of Fundamental and Translational Medicine</p></bio><email xlink:type="simple">anechkaustina1991@mail.ru</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Горностаева</surname><given-names>Е. В.</given-names></name><name name-style="western" xml:lang="en"><surname>Gornostaeva</surname><given-names>E. V.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Россия, 630117, г. Новосибирск, ул. Тимакова, 2</p><p>Россия, 630117, г. Новосибирск, ул. Тимакова, 2</p><p>младший научный сотрудник, Федеральный исследовательский центр фундаментальной итрансляционной медицины</p></bio><bio xml:lang="en"><p>2, Timakovа Street, 630117-Novosibirsk, Russia</p><p>2, Timakovа Street, 630117-Novosibirsk</p><p>junior research fellow, Federal Research Center of Fundamental and Translational Medicine</p></bio><email xlink:type="simple">phys.lena@gmail.com</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-5524-0296</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Хафизов</surname><given-names>К. Ф.</given-names></name><name name-style="western" xml:lang="en"><surname>Khafizov</surname><given-names>K. F.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Россия, 111123, г. Москва, ул. Новогиреевская, 3а</p><p>кандидат биологических наук, руководитель научной группы, Центральный научно- исследовательский институт эпидемиологии Роспотребнадзора</p><p>SPIN-код: 9082-5749. Researcher ID (WOS): E-5368-2011. Author ID (Scopus): 26536043300</p></bio><bio xml:lang="en"><p>3а, Novogireevskaya Street, 111123-Moscow, Russia</p><p>PhD, head of scientific group, Central Research Institute of Epidemiology</p><p>Researcher ID (WOS): E-5368-2011. Author ID (Scopus): 26536043300</p></bio><email xlink:type="simple">kkhafizov@gmail.com</email><xref ref-type="aff" rid="aff-6"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-9056-8796</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Вяткин</surname><given-names>Ю. В.</given-names></name><name name-style="western" xml:lang="en"><surname>Vyatkin</surname><given-names>Yu. V.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Россия, 630090, г. Новосибирск, пр. академика Лаврентьева, 6</p><p>руководитель отдела биоинформационных технологий, ООО «АкадемДжин»</p><p>Researcher ID (WOS): E-8027-2018. Author ID (Scopus): 55651086400</p></bio><bio xml:lang="en"><p>6, Academician Lavrentiev Ave., 630090-Novosibirsk, Russia</p><p>head of Department of Bioinformatic technologies, AcademGene LLC</p><p>Researcher ID (WOS): E-8027-2018. Author ID (Scopus): 55651086400.</p></bio><email xlink:type="simple">yuri@nprog.ru</email><xref ref-type="aff" rid="aff-7"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-3716-2794</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Штокало</surname><given-names>Д. Н.</given-names></name><name name-style="western" xml:lang="en"><surname>Shtokalo</surname><given-names>D. N.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Россия, 630090, г. Новосибирск, пр. академика Лаврентьева, 6</p><p>Россия, 630090, г. Новосибирск, пр. Академика Лаврентьева, 6</p><p>кандидат физико-математических наук, старший научный сотрудник, Институт систем ин-форматики им. А.П. Ершова СО РАН</p><p>SPIN-код: 2745-4217. Researcher ID (WOS): H-3351-2016. Author ID (Scopus): 14219725900</p></bio><bio xml:lang="en"><p>6, Academician Lavrentiev Ave., 630090-Novosibirsk, Russia</p><p>6, Akademika Lavrentieva Ave., 630090-Novosibirsk, Russia</p><p>PhD, senior researcher, A.P.Ershov Institute of Informatics Systems</p><p>Researcher ID (WOS): H-3351-2016. Author ID (Scopus): 14219725900</p></bio><email xlink:type="simple">shtokalod2@gmail.com</email><xref ref-type="aff" rid="aff-8"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Коваленко</surname><given-names>С. П.</given-names></name><name name-style="western" xml:lang="en"><surname>Kovalenko</surname><given-names>S. P.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Россия, 630117, г. Новосибирск, ул. Тимакова, 2</p><p>Россия, 630117, г. Новосибирск, ул. Тимакова, 2</p><p>Россия, 630090, г. Новосибирск, ул. Пирогова, 1</p><p>доктор биологический наук, заведующий лабораторией, Федеральный исследовательский центр фундаментальной и трансляционной медицины </p><p>SPIN-код: 2272-6747. Author ID (Scopus): 7101988072</p></bio><bio xml:lang="en"><p>2, Timakovа Street, 630117-Novosibirsk, Russia</p><p>2, Timakovа Street, 630117-Novosibirsk</p><p>1, Pirogova Street, 630090-Novosibirsk, Russia</p><p>PhD, head of laboratory, Federal Research Center of Fundamental and Translational Medicine  </p><p>Author ID (Scopus): 7101988072</p></bio><email xlink:type="simple">sp_kovalenko@yahoo.com</email><xref ref-type="aff" rid="aff-9"/></contrib></contrib-group><aff-alternatives id="aff-1"><aff xml:lang="ru">Федеральный исследовательский центр фундаментальной и трансляционной медицины&#13;
&#13;
Лаборатория генодиагностики ООО «Биолинк»<country>Россия</country></aff><aff xml:lang="en">Federal Research Center of Fundamental and Translational Medicine&#13;
&#13;
BioLink Ltd<country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-2"><aff xml:lang="ru">Лаборатория генодиагностики ООО «Биолинк»<country>Россия</country></aff><aff xml:lang="en">BioLink Ltd<country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-3"><aff xml:lang="ru">Новосибирский областной клинический онкологический диспансер<country>Россия</country></aff><aff xml:lang="en">Novosibirsk Regional Oncological Clinic<country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-4"><aff xml:lang="ru">Федеральный исследовательский центр фундаментальной и трансляционной медицины<country>Россия</country></aff><aff xml:lang="en">Federal Research Center of Fundamental and Translational Medicine<country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-5"><aff xml:lang="ru">Федеральный исследовательский центр фундаментальной и трансляционной медицины<country>Россия</country></aff><aff xml:lang="en">Federal Research Center of Fundamental and Translational Medicine&#13;
&#13;
BioLink Ltd<country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-6"><aff xml:lang="ru">Центральный научно-исследовательский институт эпидемиологии Роспотребнадзора<country>Россия</country></aff><aff xml:lang="en">Central Research Institute of Epidemiology<country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-7"><aff xml:lang="ru">ООО «АкадемДжин»<country>Россия</country></aff><aff xml:lang="en">AcademGene LLC<country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-8"><aff xml:lang="ru">ООО «АкадемДжин»&#13;
&#13;
Институт систем информатики им. А.П. Ершова СО РАН<country>Россия</country></aff><aff xml:lang="en">AcademGene LLC&#13;
&#13;
A.P. Ershov Institute of Informatics Systems<country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-9"><aff xml:lang="ru">Федеральный исследовательский центр фундаментальной и трансляционной медицины&#13;
&#13;
Лаборатория генодиагностики ООО «Биолинк»&#13;
&#13;
Новосибирский государственный университет<country>Россия</country></aff><aff xml:lang="en">Federal Research Center of Fundamental and Translational Medicine&#13;
&#13;
BioLink Ltd&#13;
&#13;
Novosibirsk State University<country>Russian Federation</country></aff></aff-alternatives><pub-date pub-type="collection"><year>2018</year></pub-date><pub-date pub-type="epub"><day>02</day><month>09</month><year>2018</year></pub-date><volume>17</volume><issue>4</issue><fpage>53</fpage><lpage>58</lpage><permissions><copyright-statement>Copyright &amp;#x00A9; Анисименко М.С., Пауль Г.А., Козяков А.Е., Гуткина Н.И., Бердюгина Д.А., Гаранин А.Ю., Буторина А.В., Горностаева Е.В., Хафизов К.Ф., Вяткин Ю.В., Штокало Д.Н., Коваленко С.П., 2018</copyright-statement><copyright-year>2018</copyright-year><copyright-holder xml:lang="ru">Анисименко М.С., Пауль Г.А., Козяков А.Е., Гуткина Н.И., Бердюгина Д.А., Гаранин А.Ю., Буторина А.В., Горностаева Е.В., Хафизов К.Ф., Вяткин Ю.В., Штокало Д.Н., Коваленко С.П.</copyright-holder><copyright-holder xml:lang="en">Anisimenko M.S., Paul G.A., Kozyakov A.E., Gutkina N.I., Berdyugina D.A., Garanin A.Y., Butorina A.V., Gornostaeva E.V., Khafizov K.F., Vyatkin Y.V., Shtokalo D.N., Kovalenko S.P.</copyright-holder><license license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>This work is licensed under a Creative Commons Attribution 4.0 License.</license-p></license></permissions><self-uri xlink:href="https://www.siboncoj.ru/jour/article/view/816">https://www.siboncoj.ru/jour/article/view/816</self-uri><abstract><p>Цель исследования – оценить частоту встречаемости патогенных мутаций в BRCA1 гене у женщин с раком молочной железы, проживающих в России.</p><p>Материал и методы. Проведён анализ полной кодирующей части гена BRCA1 у 445 больных раком молочной  железы на ранней стадии (возраст больных до 40 лет), проживающих в Новосибирской области (Россия), с  помощью метода таргетного секвенирования на платформе Ion Torrent. Результаты. Выявлено 40 (9 %)  носительниц различных патогенных мутаций. У 35 (7,9 %) пациенток обнаружена мутация 5382insC, описанная  ранее как «мутация-основателя» в славянской популяции. У 5 (1,1 %) пациенток были выявлены  другие различные патогенные мутации, а именно C61G, 462delCC, E143X, 4153delA и IVS18 + 1G&gt; T. Кроме  того, 29 генетических вариантов с отсутствующей или неясной клинической значимостью были обнаружены в  гене BRCA1 у 445 больных раком молочной железы на ранней стадии. Выводы. Получены данные о частоте  генетических вариаций гена BRCA1 у больных раком молочной железы на ранней стадии, проживающих в  Новосибирской области (Россия). Доля мутации 5382insC составляет 87,5 % от всех патогенных мутаций в гене BRCA1, обнаруженных у пациенток.</p></abstract><trans-abstract xml:lang="en"><sec><title>Aim of the study</title><p>Aim of the study. Aim of the study was to estimate the occurrence of pathogenic mutations in the BRCA1 gene in Russian breast cancer patients.</p></sec><sec><title>Material and methods</title><p>Material and methods. Complete coding sequence of the BRCA1 gene of 445 early onset  breast cancer patients (under 40 years) from Novosibirsk region (Russia) were analyzed by  targeted Next Generation Sequencing (NGS) using Ion Torrent platform. Results. Forty (9%) carriers of various pathogenic mutations were revealed. Thirty five (7,9%) patients  carried 5382insC mutation, described earlier as a founder mutation for Slavic population.  Five (1.1%) patients carried various pathogenic mutations, namely C61G, 462delCC, E143X,  4153delA, and IVS18+1G&gt;T. Besides, 29 genetic variants with no clinical significance or with  unknown clinical significance were detected in BRCA1 gene among 445 early onset breast  cancer patients. Conclusions. Data on the frequency of genetic variations in the BRCA1 gene among early onset breast cancer patients in the Novosibirsk Region (Russia) were  obtained. Proportion of the 5382insC mutation is 87.5% of all pathogenic mutations in the BRCA1 gene found in patients.</p></sec></trans-abstract><kwd-group xml:lang="ru"><kwd>ген BRCA1</kwd><kwd>мутация</kwd><kwd>рак молочной железы в молодом возрасте</kwd><kwd>наследственный рак</kwd><kwd>секвенирование следующего поколения</kwd><kwd>таргетное секвенирование</kwd></kwd-group><kwd-group xml:lang="en"><kwd>BRCA1 gene</kwd><kwd>mutation</kwd><kwd>early onset breast cancer</kwd><kwd>hereditary cancer</kwd><kwd>NGS</kwd><kwd>targeted sequencing</kwd></kwd-group></article-meta></front><back><ref-list><title>References</title><ref id="cit1"><label>1</label><citation-alternatives><mixed-citation xml:lang="ru">Mavaddat N., Antoniou A.C., Easton D.F., Garcia-Closas M. Genetic susceptibility to breast cancer. Mol Oncol. 2010 Jun; 4(3): 174–91. doi: 10.1016/j.molonc.2010.04.011.</mixed-citation><mixed-citation xml:lang="en">Mavaddat N., Antoniou A.C., Easton D.F., Garcia-Closas M. 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