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INTEGRAL ANALYSIS OF GENOMIC AND TRANSCRIPTOMIC CHANGES IN CLEAR CELL RENAL CELL CARCINOMA IN THE RUSSIAN POPULATION

https://doi.org/10.21294/1814-4861-2019-18-6-39-49

Abstract

Renal cell carcinoma (Rcc) is the most common form of kidney cancer, accounting for about 90 % of cancers in the kidney. clear cell renal cell carcinoma (ccRcc) is the most common histological type of Rcc. clear cell renal cell carcinoma is characterized by specific genomic and transcriptomic aberrations in the tumor. We performed a targeted sequencing of key oncogenes and a genome-wide expression study in 58 patients with Rcc belonging to a population of the western part of the Russian Federation. the integrative analysis of genomics and transcriptome data revealed that the NFkβ nuclear complex, ERBB2 receptor, and tP53 transcription factor were the key regulators of observed changes in the expression. We also carried out the analysis of the mutational landscape in key genes associated with cancer. We found the difference in the molecular mechanisms of Rcc between different populations, since the detected expression regulators were not previously described as expression mediators in Rcc. since the ERBB2 receptor is a highly attractive target for therapeutic interventions of breast cancer, we will eventually be able to develop new treatment modalities for Rcc.

About the Authors

S. A. Solodskikh
Voronezh State University
Russian Federation

Junior Researcher

1, Universitetskaya square, 394000, Voronezh, Russia





A. V. Panevina
Voronezh State University
Russian Federation

laboratory assistant

1, Universitetskaya square, 394000, Voronezh, Russia 



A. G. Novikova
Voronezh State University
Russian Federation

student

1, Universitetskaya square, 394000, Voronezh, Russia 



J. D. Dvoretskaya
Voronezh State University
Russian Federation
1, Universitetskaya square, 394000, Voronezh, Russia


M. V. Gryaznova
Voronezh State University
Russian Federation
1, Universitetskaya square, 394000, Voronezh, Russia


A. A. Starkov
Cornell University Weill Medical College
United States

PhD, Professor

1, Universitetskaya square, 394000, Voronezh, Russia 



A. Yu. Maslov
Voronezh State University, College of Medicine Albert Einstein
Russian Federation

PhD, Senior Researcher, Professor

1, Universitetskaya square, 394000, Voronezh, Russia 

1300, Morris Park avenue, 10461, Bronx, USA





A. A. Mikhailov
Voronezh State University, Voronezh Regional Clinical Oncology Center
Russian Federation
MD, PhD, Deputy Chief Physician

1, Universitetskaya square, 394000, Voronezh, Russia 4, Vaitsekhovskogo street, 394000, Voronezh, Russia



K. Khinolupos
Semmelweis University
Hungary

PhD, Professor

26, ulti street, 1085, Budapest, Hungary




V. N. Popov
Voronezh State University
Russian Federation

DSc, Head of the Department of Genetics, Cytology and Bioengineering

1, Universitetskaya square, 394000, Voronezh, Russia 

19, Prospect Revolution, 394000, Voronezh, Russia



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Review

For citations:


Solodskikh S.A., Panevina A.V., Novikova A.G., Dvoretskaya J.D., Gryaznova M.V., Starkov A.A., Maslov A.Yu., Mikhailov A.A., Khinolupos K., Popov V.N. INTEGRAL ANALYSIS OF GENOMIC AND TRANSCRIPTOMIC CHANGES IN CLEAR CELL RENAL CELL CARCINOMA IN THE RUSSIAN POPULATION. Siberian journal of oncology. 2019;18(6):39-49. (In Russ.) https://doi.org/10.21294/1814-4861-2019-18-6-39-49

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ISSN 1814-4861 (Print)
ISSN 2312-3168 (Online)