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Transcriptomic characteristics of tumorassociated macrophages in the microenvironment of triple-negative breast cancer depending on PD-L1 status

https://doi.org/10.21294/1814-4861-2025-24-5-64-71

Abstract

Objective: to characterize the transcriptomic features of CD68+ and CD163+ macrophage clusters within the tumor microenvironment of patients with triple-negative breast cancer (TNBC), depending on the PD-L1 status of the tumor.

Material and Methods. Eleven patients with TNBC were included in the study. PD-L1 status was assessed by immunohistochemistry. Spatial transcriptomic profiling was performed using the Visium 10x Genomics platform. Cluster annotation for CD68+ and CD163+ cells was carried out in Loupe Browser 8.0.0. Differential gene expression and pathway enrichment analysis were performed for CD68+ and CD163+ clusters in PD-L1-positive and PD-L1-negative groups.

Results. PD-L1-positive tumors showed compensatory recruitment of immune cells with features of functional exhaustion, in which CD68+ macrophages were involved. In contrast, PD-L1-negative tumors were characterized by an active adaptive immune response, with CD68+ macrophages functioning as antigen-presenting cells, together with evidence of negative regulation of inflammation associated with CD163+ macrophages.

Conclusion. The functional state of macrophages and other cellular components of the TNBC microenvironment varies significantly with PD-L1 status. These results may contribute to the identification of biomarkers for predicting immunotherapy response in this patient group.

About the Authors

A. Yu. Kalinchuk
Cancer Research Institute, Tomsk National Research Medical Center, Russian Academy of Sciences
Russian Federation

Anna Yu. Kalinchuk - Junior Researcher, Laboratory of Molecular Cancer Therapy, Cancer Research Institute, Researcher ID (WOS): ABF-1277-2022. Author ID (Scopus): 57797359600.

5, Kooperativny St., Tomsk, 634009



I. A. Patskan
Cancer Research Institute, Tomsk National Research Medical Center, Russian Academy of Sciences
Russian Federation

Ivan A. Patskan - Research Assistant, Laboratory of Molecular Cancer Therapy, Cancer Research Institute, Researcher ID (WOS): OJU-3352-2025. Author ID (Scopus): 59384926800.

5, Kooperativny St., Tomsk, 634009



S. V. Vtorushin
Cancer Research Institute, Tomsk National Research Medical Center, Russian Academy of Sciences
Russian Federation

Sergey V. Vtorushin - MD, DSc, Professor, Deputy Director for Research and Translational Medicine, Head of the Department of General and Molecular Pathology, Cancer Research Institute, Researcher ID (WOS): S-3789-2016. Author ID (Scopus): 26654562300.

5, Kooperativny St., Tomsk, 634009



L. A. Tashireva
Cancer Research Institute, Tomsk National Research Medical Center, Russian Academy of Sciences
Russian Federation

Liubov A. Tashireva - MD, DSc, Head of the Laboratory of Molecular Cancer Therapy, Cancer Research Institute, Researcher ID (WОS): C-8222-2012. Author ID (Scopus): 55234960400.

5, Kooperativny St., Tomsk, 634009



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Review

For citations:


Kalinchuk A.Yu., Patskan I.A., Vtorushin S.V., Tashireva L.A. Transcriptomic characteristics of tumorassociated macrophages in the microenvironment of triple-negative breast cancer depending on PD-L1 status. Siberian journal of oncology. 2025;24(5):64-71. (In Russ.) https://doi.org/10.21294/1814-4861-2025-24-5-64-71

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ISSN 1814-4861 (Print)
ISSN 2312-3168 (Online)