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Promising molecular genetic diagnostic technologies in patients with pancreatic ductal adenocarcinoma

https://doi.org/10.21294/1814-4861-2026-25-1-18-27

Abstract

The aim of this study was to evaluate the diagnostic and prognostic potential of QClamp™ real-time PCR technology for the detection of ctDNA carrying KRAS gene mutations in patients with pancreatic ductal adenocarcinoma.
Material and Methods. The study included 119 patients with different stages of pancreatic cancer. Cell-free DNA was isolated from blood plasma, and the most common somatic KRAS mutations were detected using XNA-mediated suppression of wild-type DNA amplifcation.
Results. KRAS mutations in plasma were identifed in 23.5 % of patients, with the detection rate of ctDNA increasing with disease progression, reaching 66.7 % in locally advanced disease and 25.0 % in metastatic pancreatic cancer. In patients with resectable stages (I–II), ctDNA was detected in only 15.6 % of cases; however, its presence was associated with signifcantly worse overall survival and recurrence-free survival. The concentration of total cell-free DNA varied substantially and did not directly correlate with disease stage, indicating the limited informative value of this parameter in the absence of molecular analysis.
Conclusion. The results obtained demonstrate that QClamp™ PCR is a rapid and technically feasible method for ctDNA detection with high specifcity. The greatest clinical applicability of this technology may lie in prognostication and monitoring of minimal residual disease after surgical treatment, complementing existing clinical and instrumental approaches.

About the Authors

A. V. Shabunin
S.P. Botkin Moscow Multidisciplinary Research and Clinical Center, Moscow Healthcare Department; Russian Medical Academy of Continuous Professional Education, Ministry of Health of Russia
Russian Federation

Alexey V. Shabunin, MD, DSc, Professor, Academician of the Russian Academy of Sciences, Director; Head of the Department of Surgery, Transplantology and Applied Oncology 
Researcher ID (WOS): AFE-8506-2022. Author ID (Scopus): 57201321065 

5, 2nd Botkinsky Proezd, Moscow, 125284;
2/1 Barrikadnaya St., Moscow, 125993



M. M. Tavobilov
S.P. Botkin Moscow Multidisciplinary Research and Clinical Center, Moscow Healthcare Department; Russian Medical Academy of Continuous Professional Education, Ministry of Health of Russia
Russian Federation

Mikhail M. Tavobilov, MD, DSc, Professor, Department of Surgery; Head of the Department of Hepatopancreatobiliary Surgery 
Researcher ID (WOS): L-6836-2018. Author ID (Scopus): 57201310779 

5, 2nd Botkinsky Proezd, Moscow, 125284;
2/1 Barrikadnaya St., Moscow, 125993



Z. A. Bagateliya
S.P. Botkin Moscow Multidisciplinary Research and Clinical Center, Moscow Healthcare Department; Russian Medical Academy of Continuous Professional Education, Ministry of Health of Russia
Russian Federation

Zurab A. Bagateliya, MD, DSc, First Deputy Director; Professor, Department of Surgery, Transplantology and Applied Oncology 
Researcher ID (WOS): AAB-4666-2022. Author ID (Scopus): 57199512152 

5, 2nd Botkinsky Proezd, Moscow, 125284;
2/1 Barrikadnaya St., Moscow, 125993



S. S. Lebedev
S.P. Botkin Moscow Multidisciplinary Research and Clinical Center, Moscow Healthcare Department; Russian Medical Academy of Continuous Professional Education, Ministry of Health of Russia
Russian Federation

Sergey S. Lebedev, MD, DSc, Deputy Chief Physician for Oncology; Professor, Department of Surgery, Transplantology and Applied Oncology 
Researcher ID (WOS): WU-5325- 2024. Author ID (Scopus): 7103044979 

5, 2nd Botkinsky Proezd, Moscow, 125284;
2/1 Barrikadnaya St., Moscow, 125993



Yu. N. Kobzev
S.P. Botkin Moscow Multidisciplinary Research and Clinical Center, Moscow Healthcare Department
Russian Federation

Yury N. Kobzev, MD, PhD, Head of the Molecular Genetics Laboratory 
Researcher ID (WOS): D-9170-2019. Author ID (Scopus): 6603164042. 

5, 2nd Botkinsky Proezd, Moscow, 125284



A. V. Lantsynova
S.P. Botkin Moscow Multidisciplinary Research and Clinical Center, Moscow Healthcare Department
Russian Federation

Aysa V. Lantsynova, MD, PhD, Junior Researcher, Surgeon, Department of Hepatopancreatobiliary Surgery 
Researcher ID (WOS): HKE-1684- 2023. Author ID (Scopus): 58092172900 

5, 2nd Botkinsky Proezd, Moscow, 125284



K. A. Abramov
S.P. Botkin Moscow Multidisciplinary Research and Clinical Center, Moscow Healthcare Department
Russian Federation

Kirill A. Abramov, MD, PhD, Junior Researcher, Surgeon, Department of Hepatopancreatobiliary Surgery 
Researcher ID (WOS): HPH-5187- 2023. Author ID (Scopus): 58092186200 

5, 2nd Botkinsky Proezd, Moscow, 125284



E. B. Kudryash
S.P. Botkin Moscow Multidisciplinary Research and Clinical Center, Moscow Healthcare Department; Russian Medical Academy of Continuous Professional Education, Ministry of Health of Russia
Russian Federation

Evgeniy B. Kudryash, MD, Postgraduate; Surgeon, Department of Hepatopancreatobiliary Surgery 
Researcher ID (WOS): PJA-7417-2026. Author ID (Scopus): 58513482800 

5, 2nd Botkinsky Proezd, Moscow, 125284;
2/1 Barrikadnaya St., Moscow, 125993



M. N. Aladin
S.P. Botkin Moscow Multidisciplinary Research and Clinical Center, Moscow Healthcare Department
Russian Federation

Mark N. Aladin, MD, Surgeon, Department of Hepatopancreatobiliary Surgery 
Researcher ID (WOS): GRJ-8256-2022. 

5, 2nd Botkinsky Proezd, Moscow, 125284



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Supplementary files

1. Fig. 1. Distribution of cell-free DNA concentration in plasma among patients with different stages of pancreatic cancer. Note: created by the authors
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2. Fig. 2. Frequency of detection of circulating tumor DNA (KRAS) in blood plasma of patients with pancreatic cancer at different stages of the disease. Note: created by the authors
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3. Fig. 3. Kaplan–Meier curves of overall survival (OS) in patients with resectable pancreatic cancer. Note: created by the authors
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4. Fig. 4. Kaplan–Meier curves of recur rence-free survival (RFS) in patients with resectable pancreatic cancer. Note: created by the authors
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5. Fig. 5. Distribution of cell-free DNA concentration in plasma in patients with detected (“ctDNA+”) and undetected (“ctDNA–”) mutant KRAS DNA. Note: created by the authors
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For citations:


Shabunin A.V., Tavobilov M.M., Bagateliya Z.A., Lebedev S.S., Kobzev Yu.N., Lantsynova A.V., Abramov K.A., Kudryash E.B., Aladin M.N. Promising molecular genetic diagnostic technologies in patients with pancreatic ductal adenocarcinoma. Siberian journal of oncology. 2026;25(1):18-27. (In Russ.) https://doi.org/10.21294/1814-4861-2026-25-1-18-27

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ISSN 1814-4861 (Print)
ISSN 2312-3168 (Online)