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A machine-learning-based model for predicting 90-day postoperative mortality in esophageal cancer surgery

https://doi.org/10.21294/1814-4861-2026-25-2-35-45

Abstract

Objective: to develop a preoperative model for predicting 90-day mortality to optimize treatment strategy in patients with resectable esophageal cancer and Siewert type I gastroesophageal junction cancer.

Material and Methods. A retrospective cohort study included 225 patients with resectable esophageal cancer (n=179) and Siewert type I gastroesophageal junction cancer (n=46). A total of 79 preoperative variables were analyzed. Risk factors were selected using univariate and multivariate logistic regression. The dataset was randomly split into training and validation cohorts (70/30). The predictive model was developed using l1-regularized multivariable logistic regression and the TabNet neural network featuring a sparse attentive architecture that enables estimation of feature importance. Discriminative ability and calibration were assessed using AUCROC analysis and the Hosmer–Lemeshow test.

Results. The in-hospital mortality, 30-day mortality and 90-day mortality rates were 8.9 % (n=20), 1.3 % (n=3), and 6.2 % (n=14), respectively. The most significant predictors of mortality included preoperative weight loss >10 %, grade 3–4 dysphagia, ECOG performance status ≥2, COPD, preoperative dyspnea, history of major thoracic surgery, TNM stage N2, tumor proximity to or invasion of the trachea/main bronchi, cerebrovascular disease history, diabetes mellitus, and complications during or after radiotherapy. The logistic regression model demonstrated an AUC-ROC of 0.86 (95 % Ci 0.79–0.92) in the training cohort and 0.77 (95 % CI 0.72–0.83) in the validation cohort. Calibration was supported by non-significant Hosmer–Lemeshow χ2 tests in both cohorts: χ2=1.98, df=8 (p=0.98) and χ2=4.72, df=8 (p=0.78), respectively. The TabNet neural network achieved improved discrimination with AUC-ROC values of 0.95 (95 % CI 0.92–0.98) in the training cohort and 0.86 (95 % Ci 0.82–0.96) in the validation cohort; calibration results were χ2=8.38, df=8 (p=0.39) and χ2=9.46, df=8 (p=0.30), respectively. The model has been implemented as a software application and can be used in real-world clinical scenarios.

Conclusion. In this study, a machine learning-based model for preoperative 90-day mortality prediction was developed. It demonstrated good validity and high discriminative performance. The findings support the promise of machine learning methods for clinical risk prediction in cancer surgery and highlight their potential for implementation in routine healthcare practice.

About the Authors

K. I. Salimzyanov
P.A. Herzen Moscow Oncology Research institute – Branch of the National Medical Research Center of Radiology, Ministry of Health Russia
Russian Federation

Kamil I. Salimzyanov - MD, Oncologist.

3, 2nd Botkinskiy Proezd, Moscow, 125284



A. B. Ryabov
P.A. Herzen Moscow Oncology Research institute – Branch of the National Medical Research Center of Radiology, Ministry of Health Russia
Russian Federation

Andrey B. Ryabov - MD, DSc, Deputy General Director for Surgery, National Medical Research Center of Radiology; Head of the Thoracoabdominal Oncosurgery Department, P.A. Herzen Moscow Oncology Research Institute – Branch of the NMRCR, MHR.

3, 2nd Botkinskiy Proezd, Moscow, 125284



V. M. Khomyakov
P.A. Herzen Moscow Oncology Research institute – Branch of the National Medical Research Center of Radiology, Ministry of Health Russia
Russian Federation

Vladimir M. Khomyakov - MD, DSc, Head of the Thoracoabdominal Surgery Department.

3, 2nd Botkinskiy Proezd, Moscow, 125284



I. V. Kolobaev
P.A. Herzen Moscow Oncology Research institute – Branch of the National Medical Research Center of Radiology, Ministry of Health Russia
Russian Federation

Ilya V. Kolobaev - MD, PhD, Head of the Thoracoabdominal Surgery Department.

3, 2nd Botkinskiy Proezd, Moscow, 125284



E. I. Smolenov
A.F. Tsyb Medical Radiological Research Center – Branch of the National Medical Research Center of Radiology, Ministry of Health Russia
Russian Federation

Evgeniy I. Smolenov - MD, PhD, Oncologist.

4, Koroleva St., Obninsk, 249036



B. I. Salimzyanov
PJSC Sberbank
Russian Federation

Bulat I. Salimzyanov - Head of Generative Artificial Intelligence.

19, Vavilova St., Moscow, 117312



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Supplementary files

1. Fig. 1. Graph of the probability of a fatal outcome depending on the number of points. Note: created by the authors
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2. Fig. 2. Graph of patient mortality rate by risk group. Note: created by the authors
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3. Fig. 3. ROC-curve of the logistic regression model in the control group. Note: created by the authors
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4. Fig. 4. Distribution of SHAP values for the 20 most significant factors in the TabNet model. Note: created by the authors
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5. Fig. 5. Comparison of ROC-curves of models based on a neural network and logistic regression in the control group. Note: created by the authors
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Salimzyanov K.I., Ryabov A.B., Khomyakov V.M., Kolobaev I.V., Smolenov E.I., Salimzyanov B.I. A machine-learning-based model for predicting 90-day postoperative mortality in esophageal cancer surgery. Siberian journal of oncology. 2026;25(2):35-45. (In Russ.) https://doi.org/10.21294/1814-4861-2026-25-2-35-45

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ISSN 1814-4861 (Print)
ISSN 2312-3168 (Online)